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Top 7+ payroll mistakes businesses must avoid

01/10/2025

Payroll mistakes often start small but they can quickly grow into serious problems. Many HR teams and business owners underestimate how easily these errors occur. In this article, terra will share the payroll mistakes businesses should avoid and how to handle them with confidence.

Why payroll accuracy matters to businesses?

Accurate payroll is the foundation of trust between a company and its employees. When people are paid correctly and on time, they feel valued and remain motivated. But when errors happen, they can create frustration, lower morale, and trigger unnecessary turnover.

From a business standpoint, payroll accuracy safeguards compliance and financial stability. Mistakes in tax reporting or benefit contributions can lead to penalties, audits, and damage to the company’s reputation. 

Payroll accuracy matters to businesses
Payroll accuracy matters to businesses

Common payroll mistakes companies make

Many businesses are unaware of how often payroll errors creep into their operations. Knowing the most common pitfalls helps leaders spot problems early and prevent costly consequences.

Misclassifying employees and contractors

A common mistake is labeling someone as a contractor when they should be an employee, or vice versa. This usually happens when HR or managers hire freelancers or part-time staff without reviewing the legal distinction between employees and contractors. For example, a company may hire contract workers for a long-term project but treat them incorrectly as independent contractors, leading to missed social insurance contributions. 

The direct consequences are unexpected tax audits and retroactive corrections in social insurance contributions, often forcing companies to reprocess months of payroll. Misclassification also creates extra workload for HR trying to reconcile records. 

See more: What is a pay scale? How companies decide who gets paid what

Missing payroll deadlines

Paydays are a critical moment for employees. Delays can lower confidence, reduce motivation, and create dissatisfaction. In many countries, repeated late payments can also lead to regulatory penalties. Causes usually include delayed approvals, last-minute adjustments, or reliance on manual calculations. 

Incorrect overtime and leave calculations

Overtime and leave rules vary by country, industry, and contract type. Mistakes are common when payroll staff misapply rates or forget to account for holidays. Underpayments can frustrate employees and prompt complaints, while overpayments create unnecessary cost and inaccurate reporting. Using software that calculates overtime and leave based on official rules can prevent repeated errors.

Overlooking payroll compliance updates

Tax rates, social insurance rules, and labor laws change frequently. Failing to follow updates can lead to unpaid taxes, fines, or audits. Companies may also face reputational damage with employees who notice mistakes in their paychecks. The costs can be direct, like penalties, and indirect, like extra work to fix past errors.

Poor record-keeping

Payroll errors often occur when records are incomplete or scattered across different systems. Missing information about hours, deductions, or benefits makes it harder to check payments and slows problem-solving. This can lead to overpayments, fines, and confusion. Employees may start questioning whether their pay is accurate, which can reduce trust and satisfaction.

Manual payroll processing

Using spreadsheets or paper forms for payroll increases the chance of mistakes in calculations and data entry. Even small errors can add up to significant financial losses. Manual processes also take a lot of HR time, which is costly for the company. Mistakes can affect salaries, taxes, and benefits, creating stress for both employees and payroll staff.

Manual payroll processing
Manual payroll processing

Not updating with regulatory changes

Small changes in tax rates or social insurance contributions can lead to big payroll problems if overlooked. Companies operating in multiple regions face even more complexity. Mistakes can mean underpaid or overpaid salaries, penalties from authorities, and unhappy employees. The financial impact can be serious, and repeated errors can damage employee confidence.

Mismanaging benefits and deductions

Errors in calculating benefits, bonuses, or deductions are common when policies are complex. Underpaying employees can frustrate them and risk non-compliance, while overpaying puts extra strain on company budgets. 

Mistakes in deductions may also require corrections, creating extra work and cost. Over time, repeated errors can affect finances and employee trust in payroll accuracy.

See more: Everything you need to know about salary slip

Costly payroll mistakes and their consequences

Payroll mistakes often look minor at first but can spiral into bigger challenges over time. A payroll tax mistake or miscalculated leave balance, for example, may seem like an isolated error but can accumulate across multiple pay cycles. 

Costly payroll mistakes and their consequences
Costly payroll mistakes and their consequences

Financial penalties and back payments

Mistakes like misclassifying employees, underreporting taxes, or missing contributions often trigger fines from tax authorities or labor departments. Businesses may be required to pay months of back contributions with added interest. 

These penalties can affect cash flow and force HR and finance teams to spend extra hours recalculating and submitting corrections. Small oversights can escalate into significant unplanned costs.

Increased risk of audits

Payroll errors, even minor ones, increase the likelihood of inspections or audits by government authorities. Payroll tax mistakes, incorrect deductions, or inconsistent records raise red flags during routine checks. 

Audits are time-consuming, require detailed documentation, and often uncover additional discrepancies that compound the problem. For companies operating across multiple locations, coordinating responses becomes even more complex.

Loss of employee trust

Errors such as late payments, incorrect overtime, or mismanaged benefits reduce confidence in payroll reliability. Employees may question the accuracy of their paychecks or feel their work is undervalued. Even small repeated errors can affect engagement, attendance, and cooperation with HR processes. Restoring trust requires significant effort and clear communication.

Loss of employee trust
Loss of employee trust

Employee lawsuits

Severe payroll mistakes, like consistent underpayment or failure to comply with labor regulations, can lead to formal complaints or lawsuits. Legal action may involve claims for unpaid wages, penalties, or damages. 

These cases often consume HR and legal resources, take months to resolve, and can result in court-ordered payments that are substantially higher than the initial payroll error.

HR workload and distraction

Correcting payroll errors consumes a disproportionate amount of HR time. Staff must investigate issues, reprocess payroll, communicate with employees, and respond to regulators. This distraction pulls resources away from strategic HR activities such as talent management, policy development, or employee engagement initiatives. Repeated mistakes can lead to burnout within the HR team.

Reputational damage

Ongoing payroll issues affect the company’s reputation internally and externally. Employees talk to peers, social networks, and even potential recruits about errors and delays. Reputational damage can impact hiring, partnerships, and client confidence. 

High-profile errors reported in the media or industry circles amplify these consequences, making it harder for the business to attract top talent or maintain credibility.

Real-world examples of payroll mistakes

If you think payroll mistakes are rare or only happen in small companies, these examples prove otherwise. Even well-established organizations face costly payroll mistakes from miscalculations.

Slater + Gordon – Incorrect leave calculations

Slater + Gordon, a major law firm, faced a lawsuit from former HR director Alicia Gleeson due to miscalculated leave entitlements. Over 100 employees were underpaid, totaling AUD 300,000 over more than a decade from 2011 to 2023. The issue stemmed from inaccurate leave tracking and inconsistent application of leave policies across teams.

The fallout was significant: payroll staff had to recalculate records, communicate adjustments, and manage legal proceedings. This case shows that long-term inaccuracies in leave management can create major payroll liabilities and legal exposure.

Even a law firm must face payroll compliance challenges
Even a law firm must face payroll compliance challenges

Greater Western Water – Overpayment due to miscounted workdays

Greater Western Water – a water utility company, required 670 employees to repay an average of AUD 1,600 each after discovering payroll errors. Miscounted workdays during payroll calculation caused overpayments, illustrating the consequences of lapses in attendance tracking and HR verification processes.

The overpayments created administrative burdens, strained employee relations, and risked reputational harm. Employees had to repay the excess amounts which caused frustration and distrust. The key takeaway is that accurate workday recording and routine reconciliations are critical to avoid costly payroll errors.

Manufacturing company – Payroll mistakes during sudden expansion

A manufacturing company grew from 300 to more than 600 employees within a year after securing new contracts. The rapid expansion left its HR team struggling with spreadsheets and manual inputs, leading to inconsistent overtime payments, errors in leave balances, and overlooked insurance contributions. These small inaccuracies piled up into costly payroll mistakes, including payroll tax errors that later required back payments and extra filings.

The constant corrections drained HR’s time and even disrupted production, as line managers were pulled into payroll disputes. To stop the cycle, the company turned to terra. With terra Payroll, data was centralized, tax updates were automated, and complex calculations were reviewed by specialists. Within a few months, payroll errors dropped sharply, employee complaints eased, and the company avoided further payroll mistake while restoring confidence in its payroll operations.

How to prevent payroll mistakes

Payroll mistakes are not only expensive but also avoidable if companies take the right preventive steps. Instead of waiting until problems surface through penalties, audits, or employee complaints, HR and business leaders can adopt proactive measures to strengthen payroll accuracy. 

Prevent payroll mistakes
Prevent payroll mistakes

Implement reliable payroll systems

Relying on spreadsheets or manual inputs leaves payroll vulnerable to human error. Implementing a reliable payroll system means automating salary calculations, tax deductions, and reporting, all within a centralized platform. These systems also integrate with time-tracking and HRM tools, giving HR teams better visibility into employee data. 

However, automation is not a “set and forget” solution. If the initial data is wrong, the system will keep producing the same mistake month after month, and fixing it later can be both costly and time-consuming. Smaller companies also face the challenge of high subscription or implementation costs compared to the scale of their payroll.

AdvantagesDisadvantages
  • Improves accuracy in recurring tasks
  • Saves time in payroll runs
  • Enhances reporting and transparency
  • High setup and licensing costs
  • Errors in data entry get multiplied
  • Requires ongoing updates and staff training

See more: 15+ effective payroll software for businesses in Vietnam 2025

Stay updated with payroll tax regulations

Payroll taxes are a moving target. Governments frequently revise income tax brackets, contribution rates for pensions or insurance, and deadlines for filings. Staying updated means continuously monitoring legal changes and applying them correctly to payroll processes. 

For multinational businesses, the challenge multiplies as each jurisdiction has its own set of rules. Missing a new requirement may not cause an immediate issue, but over time it can result in significant underpayments or overpayments, both of which lead to penalties and back payments.

AdvantagesDisadvantages
  • Helps avoid penalties and back payments
  • Keeps payroll aligned with labor laws
  • Improves credibility with regulators
  • Complex to manage across multiple jurisdictions
  • Requires legal and technical expertise
  • Time-consuming for HR/finance teams

Conduct regular payroll audits

By reviewing pay slips, tax filings, overtime records, and leave balances, companies can uncover hidden discrepancies before they snowball. For example, unnoticed errors in overtime calculations may accumulate for years, leading to large correction costs when finally discovered. Audits also help confirm whether benefit deductions or pension contributions are handled correctly. The drawback, however, is that audits require resources: financial investment in auditors, dedicated HR time, and the willingness to pause other work. Over-auditing can even disrupt payroll cycles and delay other HR priorities.

AdvantagesDisadvantages
  • Detects errors early
  • Strengthens internal controls
  • Builds confidence with employees and regulators
  • Expensive to conduct thoroughly
  • Resource-intensive for HR teams
  • May slow daily operations if too frequent

Outsource payroll to experts integrated with an HRM system

Many organizations are shifting toward a BPaaS (Business Process as a Service) model that combines modern payroll technology with expert support. Instead of HR teams manually running every step, companies work with payroll providers who integrate directly with their HRM system

This means calculations, compliance updates, and filings are handled by specialists while technology automates routine tasks. For businesses, the benefit is not just accuracy but also scalability. 

Whether you’re a startup with 20 employees or a multinational with thousands, outsourced payroll services adjust to your needs. That said, it requires careful vendor selection and strong agreements on data confidentiality.

AdvantagesDisadvantages
  • Blends automation with expert oversight
  • Reduces HR’s administrative workload
  • Flexible pricing for different company sizes
  • Provides accurate, timely, and compliant payroll
  • Requires careful vendor selection
  • Concerns over data confidentiality
  • Reliance on third-party responsiveness

Frequently asked questions about payroll mistakes

Payroll errors can create confusion for both employees and employers. If you’ve ever wondered who carries the responsibility, how long claims can be made, or what happens when tax errors are discovered years later, the following FAQs will answer the most common concerns.

Frequently asked questions about payroll mistakes
Frequently asked questions about payroll mistakes

Who is legally responsible for payroll mistakes: the HR manager, the finance team, or the company?

Ultimately, the company is legally responsible for payroll accuracy, even if the errors stem from HR or finance staff. While individual managers may face disciplinary action internally, external authorities or courts hold the organization accountable for compliance and restitution.

Can an employee refuse to work if payroll mistakes keep happening?

Employees generally cannot lawfully stop working as a response to payroll mistakes unless the situation escalates into a serious breach of contract, such as persistent underpayment. However, they may lodge complaints with labor regulators, pursue legal claims, or resign and claim constructive dismissal depending on jurisdiction.

What documentation should HR keep to defend against payroll-related lawsuits?

HR should maintain detailed records of employment contracts, payslips, timesheets, leave balances, tax withholdings, and correspondence related to payroll corrections. These documents provide evidence of compliance efforts and are often the first line of defense in case of disputes.

Can repeated payroll errors be considered a breach of contract?

Yes. Employment contracts specify wage entitlements, and consistent failure to pay correctly can be deemed a breach of those terms. In many jurisdictions, this opens the door for lawsuits, back payments, and compensation for damages.

What’s the statute of limitations for payroll mistakes and unpaid wages?

The statute of limitations varies by jurisdiction. For example, in Australia, employees can generally make claims for underpayment going back six years, while in the U.S., the federal limit under the Fair Labor Standards Act is two years (three years for willful violations). Companies must check local labor law carefully.

If a payroll tax mistake is discovered years later, who pays? The company or the employee?

Typically, the employer bears the liability for payroll tax errors, especially if they failed to withhold or remit correctly. In rare cases, employees may be required to settle unpaid personal income tax, but penalties and interest usually fall on the company.

Do payroll mistakes affect year-end tax reporting for employees?

Yes. Errors in wage reporting or tax withholding can cause mismatches in annual tax statements, leading to amended filings, delayed refunds, or unexpected tax bills. Employers must correct mistakes promptly and issue revised tax forms where necessary.

How should HR communicate payroll errors to employees without damaging trust?

Transparency and speed are essential. HR should acknowledge the mistake, explain its cause, outline corrective steps, and provide a timeline for resolution. Offering a clear apology and compensation (if applicable) helps maintain credibility and prevent resentment.

Can repeated payroll mistakes trigger external audits from tax authorities?

Yes. Frequent discrepancies in payroll filings may flag a company for audit by tax authorities or labor regulators. Regular internal audits and proactive corrections are the best way to avoid external scrutiny.

terra Payroll – How payroll services help businesses avoid costly mistakes

Payroll mistakes can drain resources, trigger compliance penalties, and damage employee trust. Many organizations have realized that managing payroll in-house is not only time-consuming but also risky, especially when tax rules keep changing. That’s why more companies are moving toward payroll services and payroll outsourcing to safeguard accuracy and compliance.

terra offers a trusted payroll service in Vietnam, designed to support businesses of all sizes. With our professional payroll solutions, you will gain a partner who ensures every calculation, deduction, and tax filing is done right the first time.

With terra Payroll outsourcing services, businesses will get:

  • Accuracy and compliance: Payroll handled under current tax and labor laws.
  • Efficiency: Reduced processing time with streamlined workflows.
  • Transparency: Real-time data access for HR and management.
  • Scalability: Flexible outsourced payroll services designed to adapt as your company expands.
terra’s all-in-one payroll service for FDI companies
terra’s all-in-one payroll service for FDI companies

Backed by years of experience in HR and compliance, terra Payroll combines expertise with advanced technology. Our payroll service is built to minimize risks, eliminate errors, and give businesses the confidence that every employee is paid correctly.

Contact us for a payroll consultation!

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    Conclusion

    Payroll mistakes don’t just affect payslips, they affect the entire business. The safest way forward is to prevent errors before they happen, rather than spending time and resources fixing them later.

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